MOLECULAR DYNAMICS PERFORMANCE GUIDE - Digital Research Alliance of CANADA

SOFTWARE DETAILS

ID=31, SANDER.QUICK.cuda.MPI

  • Module/Version: ambertools/23
  • Toolchain/Version: gofbc/2020.1.403.114
  • CPU instruction set: avx2
  • Example job submission script:

    #!/bin/bash
    #SBATCH -A def-svassili
    #SBATCH --ntasks=2 --cpus-per-task=1
    #SBATCH --gpus-per-task=v100l:1
    #SBATCH --mem-per-cpu=4000 --time=02:00:00

    module purge
    module load StdEnv/2020 gcc/9.3.0 cuda/11.4 openmpi/4.0.3 ambertools/23

    srun sander.quick.cuda.MPI -O -i B3LYP.in -p complex_solv_PNP.prmtop -c mini-QMMM_4.rst -ref mini-QMMM_4.rst

  • Benchmark submission script:
      

    #!/bin/bash
    #SBATCH -A def-svassili
    #SBATCH --ntasks=2 --cpus-per-task=1
    #SBATCH --gpus-per-task=v100l:1
    #SBATCH --mem-per-cpu=4000 --time=02:00:00

    module purge
    module load StdEnv/2020 gcc/9.3.0 cuda/11.4 openmpi/4.0.3 ambertools/23

    srun sander.quick.cuda.MPI -O -i B3LYP.in -p complex_solv_PNP.prmtop -c mini-QMMM_4.rst -ref mini-QMMM_4.rst