MOLECULAR DYNAMICS PERFORMANCE GUIDE - Digital Research Alliance of CANADA

SOFTWARE DETAILS

ID=51, OPENMM.cuda

  • Module/Version: openmm/8.4.0
  • Toolchain/Version: gofbc/2023.2.415.126
  • CPU instruction set: avx512
  • Example job submission script:

    #!/bin/bash
    #SBATCH --cpus-per-task=1
    #SBATCH --gpus-per-node=h100:1
    #SBATCH --mem=4000
    #SBATCH --time=1:0:0

    module purge
    module load StdEnv/2023 gcc/12.3 openmpi/4.1.5 cuda/12.6 openmm/8.4.0 ambertools/25.0

    python openmm_input.py

  • Benchmark submission script:
      

    #!/bin/bash
    #SBATCH --cpus-per-task=1
    #SBATCH --gpus-per-node=h100:1
    #SBATCH --mem=4000
    #SBATCH --time=1:0:0

    module purge
    module load StdEnv/2023 gcc/12.3 openmpi/4.1.5 cuda/12.6 openmm/8.4.0 ambertools/25.0

    python openmm_input.py